PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022003P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 399aa    MW: 44565.1 Da    PI: 6.966
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022003P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d++k++G g+W++ +++ g+ R++k+c++rw +yl
   MELO3C022003P1 14 KGPWTPEEDQKLLDYIKEHGHGSWRALPSKAGLQRCGKSCRLRWINYL 61
                     79********************************************97 PP

2Myb_DNA-binding52.89e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
   MELO3C022003P1  67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.971961IPR017930Myb domain
SuperFamilySSF466891.91E-3011108IPR009057Homeodomain-like
SMARTSM007171.5E-141363IPR001005SANT/Myb domain
PfamPF002495.6E-171461IPR001005SANT/Myb domain
CDDcd001671.51E-111661No hitNo description
PROSITE profilePS5129425.89162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2665116IPR009057Homeodomain-like
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002494.8E-1667112IPR001005SANT/Myb domain
CDDcd001672.57E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGRSPCCDKV GLKKGPWTPE EDQKLLDYIK EHGHGSWRAL PSKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLTKMG  120
IDPVTHKPKN DALLTADGHS KSAANLSHIA QWESARLEAE ARLVRESRLR TSTTATTTNP  180
PSPLLLTKPE PPPAIPSRSL DALKPWNHGL GRGITSGDHH LESPTSTLTF SENVRTVMGT  240
GSGGENSIAM IEFVGSSSSC HEWKEEGFGN SSSQLQEDHH HHHHQYKEGF ENSMSFTSHE  300
MTLSIEATTT TWTSESLRSS TRDHHHNNHN NNHNNDIVEE GFTNLLLNNN VDERNQSDAG  360
GGEESENGSG SDYYEDNKNY WNSILNLVNS SPSDSSIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27121165108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818890.0LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459338.10.0PREDICTED: myb-related protein 306-like
TrEMBLA0A0A0KXE90.0A0A0A0KXE9_CUCSA; Uncharacterized protein
STRINGPOPTR_0017s12230.11e-161(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-117myb domain protein 16